IL_6DNC_107

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6DNC|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_107 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.2774

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6DNC|1|B|G|1087
6DNC|1|B|A|1088
6DNC|1|B|A|1089
6DNC|1|B|A|1090
6DNC|1|B|G|1091
*
6DNC|1|B|C|1100
6DNC|1|B|U|1101
6DNC|1|B|C|1102

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L6

Chain JA

50S ribosomal protein L36

Chain M

50S ribosomal protein L11