IL_6DNC_108
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 6DNC|1|B|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_108 not in the Motif Atlas
- Homologous match to IL_4WF9_044
- Geometric discrepancy: 0.103
- The information below is about IL_4WF9_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
6DNC|1|B|C|1196
6DNC|1|B|G|1197
6DNC|1|B|U|1198
*
6DNC|1|B|A|1247
6DNC|1|B|G|1248
6DNC|1|B|U|1249
6DNC|1|B|G|1250
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L20
Coloring options: