IL_6DNC_115

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_115 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1306

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6DNC|1|B|C|1357
6DNC|1|B|G|1358
6DNC|1|B|A|1359
6DNC|1|B|G|1360
6DNC|1|B|G|1361
*
6DNC|1|B|C|1370
6DNC|1|B|G|1371
6DNC|1|B|U|1372
6DNC|1|B|A|1373
6DNC|1|B|G|1374

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L28

Chain F

50S ribosomal protein L2

Chain HA

50S ribosomal protein L34