IL_6DNC_131

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6DNC|1|B|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_131 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.147

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6DNC|1|B|U|1712
6DNC|1|B|A|1713
6DNC|1|B|U|1714
6DNC|1|B|G|1715
6DNC|1|B|U|1716
6DNC|1|B|A|1717
6DNC|1|B|G|1718
*
6DNC|1|B|U|1742
6DNC|1|B|G|1743
6DNC|1|B|A|1744
6DNC|1|B|A|1745
6DNC|1|B|A|1746

Current chains

Chain B

23S ribosomal RNA

Nearby chains