IL_6DNC_139

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_139 not in the Motif Atlas

Homologous match to IL_4WF9_076

Geometric discrepancy: 0.1268

The information below is about IL_4WF9_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_22551.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

6DNC|1|B|G|1933
6DNC|1|B|C|1934
*
6DNC|1|B|G|1964
6DNC|1|B|C|1965
6DNC|1|B|A|1966
6DNC|1|B|C|1967

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LA

Transfer RNA; tRNA

Chain MA

Peptide chain release factor 1