IL_6DNC_152
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_152 not in the Motif Atlas
- Homologous match to IL_4WF9_087
- Geometric discrepancy: 0.1183
- The information below is about IL_4WF9_087
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6DNC|1|B|C|2350
6DNC|1|B|G|2351
6DNC|1|B|A|2352
6DNC|1|B|G|2353
*
6DNC|1|B|C|2364
6DNC|1|B|G|2365
6DNC|1|B|A|2366
6DNC|1|B|G|2367
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain IA
- 50S ribosomal protein L35
- Chain S
- 50S ribosomal protein L18
Coloring options: