IL_6DNC_160

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6DNC|1|B|G|2576, 6DNC|1|B|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_160 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1298

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6DNC|1|B|C|2510
6DNC|1|B|U|2511
6DNC|1|B|C|2512
*
6DNC|1|B|G|2574
6DNC|1|B|C|2575
6DNC|1|B|G|2576
6DNC|1|B|A|2577
6DNC|1|B|G|2578

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain FA

50S ribosomal protein L32

Chain G

50S ribosomal protein L3

Chain MA

Peptide chain release factor 1