IL_6DNC_162

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6DNC|1|B|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_162 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1252

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6DNC|1|B|U|2522
6DNC|1|B|G|2523
*
6DNC|1|B|C|2540
6DNC|1|B|A|2541
6DNC|1|B|A|2542
6DNC|1|B|G|2543

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain JA

50S ribosomal protein L36

Chain N

50S ribosomal protein L13