IL_6DNC_163

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_163 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1595

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

6DNC|1|B|A|2589
6DNC|1|B|A|2590
6DNC|1|B|C|2591
*
6DNC|1|B|G|2603
6DNC|1|B|U|2604
6DNC|1|B|U|2605

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L2

Chain LA

Transfer RNA; tRNA

Chain MA

Peptide chain release factor 1