IL_6DNC_173
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_173 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.1131
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6DNC|1|B|G|2843
6DNC|1|B|G|2844
6DNC|1|B|U|2845
6DNC|1|B|G|2846
*
6DNC|1|B|C|2870
6DNC|1|B|U|2871
6DNC|1|B|A|2872
6DNC|1|B|A|2873
6DNC|1|B|C|2874
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L19
Coloring options: