IL_6DNC_181

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6DNC|1|A|U|1029, 6DNC|1|A|U|1030, 6DNC|1|A|C|1031, 6DNC|1|A|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DNC|1|A|G|1003
6DNC|1|A|A|1004
6DNC|1|A|A|1005
6DNC|1|A|G|1006
*
6DNC|1|A|U|1023
6DNC|1|A|G|1024
6DNC|1|A|U|1025
6DNC|1|A|G|1026
6DNC|1|A|C|1027
6DNC|1|A|C|1028
6DNC|1|A|U|1029
6DNC|1|A|U|1030
6DNC|1|A|C|1031
6DNC|1|A|G|1032
6DNC|1|A|G|1033
6DNC|1|A|G|1034
6DNC|1|A|A|1035
6DNC|1|A|A|1036
6DNC|1|A|C|1037

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S14