IL_6DTI_014

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

6DTI|1|A|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_014 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1328

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6DTI|1|A|U|363
6DTI|1|A|U|364
6DTI|1|A|C|365
*
6DTI|1|A|G|388
6DTI|1|A|A|389

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16