IL_6DTI_026
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GG*CCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DTI_026 not in the Motif Atlas
- Homologous match to IL_6CZR_140
- Geometric discrepancy: 0.2224
- The information below is about IL_6CZR_140
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.5
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 44
Unit IDs
6DTI|1|A|G|641
6DTI|1|A|G|642
*
6DTI|1|A|C|731
6DTI|1|A|C|732
6DTI|1|A|C|733
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain O
- 30S ribosomal protein S15
Coloring options: