IL_6DTI_044

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

6DTI|1|A|C|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_044 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.3583

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6DTI|1|A|C|1106
6DTI|1|A|C|1107
6DTI|1|A|A|1108
6DTI|1|A|G|1109
6DTI|1|A|C|1110
*
6DTI|1|A|G|1120
6DTI|1|A|G|1121

Current chains

Chain A

16s rRNA

Nearby chains

Chain I

30S ribosomal protein S9