IL_6DTI_061

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6DTI|1|A|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_061 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2879

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6DTI|1|A|G|900
6DTI|1|A|A|901
6DTI|1|A|C|902
*
6DTI|1|A|G|1369
6DTI|1|A|U|1370
6DTI|1|A|A|1371
6DTI|1|A|C|1372

Current chains

Chain A

16s rRNA

Nearby chains

Chain E

30S ribosomal protein S5