IL_6DTI_062

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UAGGAACC*GGGUGCCCCGGGGAGCCCUA

Length

28 nucleotides

Bulged bases

6DTI|1|A|G|981, 6DTI|1|A|C|984, 6DTI|1|A|U|1003, 6DTI|1|A|C|1008, 6DTI|1|A|G|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DTI|1|A|U|978
6DTI|1|A|A|979
6DTI|1|A|G|980
6DTI|1|A|G|981
6DTI|1|A|A|982
6DTI|1|A|A|983
6DTI|1|A|C|984
6DTI|1|A|C|985
*
6DTI|1|A|G|1000
6DTI|1|A|G|1001
6DTI|1|A|G|1002
6DTI|1|A|U|1003
6DTI|1|A|G|1004
6DTI|1|A|C|1005
6DTI|1|A|C|1006
6DTI|1|A|C|1007
6DTI|1|A|C|1008
6DTI|1|A|G|1009
6DTI|1|A|G|1010
6DTI|1|A|G|1011
6DTI|1|A|G|1012
6DTI|1|A|A|1013
6DTI|1|A|G|1014
6DTI|1|A|C|1015
6DTI|1|A|C|1016
6DTI|1|A|C|1017
6DTI|1|A|U|1018
6DTI|1|A|A|1019

Current chains

Chain A

16s rRNA

Nearby chains