IL_6DTI_064

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_064 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1246

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6DTI|1|A|C|1236
6DTI|1|A|C|1237
6DTI|1|A|A|1238
6DTI|1|A|C|1239
*
6DTI|1|A|G|1250
6DTI|1|A|G|1251
6DTI|1|A|A|1252
6DTI|1|A|G|1253

Current chains

Chain A

16s rRNA

Nearby chains

Chain V

30S ribosomal protein Thx