IL_6DZI_001

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_001 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.1236

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6DZI|1|A|G|21
6DZI|1|A|U|22
6DZI|1|A|G|23
6DZI|1|A|G|24
6DZI|1|A|A|25
6DZI|1|A|U|26
6DZI|1|A|G|27
*
6DZI|1|A|C|597
6DZI|1|A|U|598
6DZI|1|A|G|599
6DZI|1|A|A|600
6DZI|1|A|A|601
6DZI|1|A|A|602
6DZI|1|A|C|603

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32