IL_6DZI_004

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

6DZI|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_004 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.2192

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_54465.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

6DZI|1|A|G|78
6DZI|1|A|G|79
6DZI|1|A|G|80
6DZI|1|A|A|81
6DZI|1|A|G|82
*
6DZI|1|A|C|95
6DZI|1|A|G|96
6DZI|1|A|U|97
6DZI|1|A|U|98
6DZI|1|A|G|99
6DZI|1|A|A|100
6DZI|1|A|U|101
6DZI|1|A|C|102

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29