IL_6DZI_015

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_015 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.1447

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6DZI|1|A|C|656
6DZI|1|A|C|657
6DZI|1|A|U|658
*
6DZI|1|A|A|667
6DZI|1|A|U|668
6DZI|1|A|G|669

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L15

Chain R

50S ribosomal protein L20

Chain S

50S ribosomal protein L21

Chain b

50S ribosomal protein L32