IL_6DZI_019
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- GAAGC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6DZI|1|A|G|916, 6DZI|1|A|G|920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_019 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1742
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DZI|1|A|G|789
6DZI|1|A|A|790
6DZI|1|A|A|791
6DZI|1|A|G|792
6DZI|1|A|C|793
*
6DZI|1|A|G|914
6DZI|1|A|U|915
6DZI|1|A|G|916
6DZI|1|A|A|917
6DZI|1|A|U|918
6DZI|1|A|A|919
6DZI|1|A|G|920
6DZI|1|A|C|921
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
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