IL_6DZI_030

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCUACUG*CAAAC

Length

12 nucleotides

Bulged bases

6DZI|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_030 not in the Motif Atlas

Geometric match to IL_4V9F_035

Geometric discrepancy: 0.2162

The information below is about IL_4V9F_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|A|G|979
6DZI|1|A|C|980
6DZI|1|A|U|981
6DZI|1|A|A|982
6DZI|1|A|C|983
6DZI|1|A|U|984
6DZI|1|A|G|985
*
6DZI|1|A|C|1023
6DZI|1|A|A|1024
6DZI|1|A|A|1025
6DZI|1|A|A|1026
6DZI|1|A|C|1027

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16