IL_6DZI_050

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

6DZI|1|A|C|1436, 6DZI|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_050 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.5645

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6DZI|1|A|G|1434
6DZI|1|A|C|1435
6DZI|1|A|C|1436
6DZI|1|A|A|1437
6DZI|1|A|G|1438
*
6DZI|1|A|C|1446
6DZI|1|A|G|1447
6DZI|1|A|C|1448

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain T

50S ribosomal protein L22

Chain U

50S ribosomal protein L23