IL_6DZI_063

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6DZI|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_063 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1601

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|A|U|1689
6DZI|1|A|A|1690
6DZI|1|A|A|1691
6DZI|1|A|G|1692
*
6DZI|1|A|U|1742
6DZI|1|A|G|1743
6DZI|1|A|A|1744
6DZI|1|A|U|1745
6DZI|1|A|G|1746

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains