IL_6DZI_065

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AG*CAUAUAU

Length

9 nucleotides

Bulged bases

6DZI|1|A|U|1728, 6DZI|1|A|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_065 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5528

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6DZI|1|A|A|1702
6DZI|1|A|G|1703
*
6DZI|1|A|C|1726
6DZI|1|A|A|1727
6DZI|1|A|U|1728
6DZI|1|A|A|1729
6DZI|1|A|U|1730
6DZI|1|A|A|1731
6DZI|1|A|U|1732

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains