IL_6DZI_069

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_069 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.14

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

6DZI|1|A|G|1884
6DZI|1|A|G|1885
6DZI|1|A|A|1886
6DZI|1|A|A|1887
*
6DZI|1|A|U|2217
6DZI|1|A|C|2218

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14