IL_6DZI_072

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

6DZI|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_072 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.3102

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|C|1930
6DZI|1|A|A|1931
6DZI|1|A|U|1932
6DZI|1|A|G|1933
6DZI|1|A|G|1934
*
6DZI|1|A|U|1960
6DZI|1|A|G|1961
6DZI|1|A|A|1962
6DZI|1|A|G|1963

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains