IL_6DZI_080

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUAAGA*UUUAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_080 not in the Motif Atlas

Geometric match to IL_4V9F_057

Geometric discrepancy: 0.3965

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|A|U|2068
6DZI|1|A|U|2069
6DZI|1|A|A|2070
6DZI|1|A|A|2071
6DZI|1|A|G|2072
6DZI|1|A|A|2073
*
6DZI|1|A|U|2110
6DZI|1|A|U|2111
6DZI|1|A|U|2112
6DZI|1|A|A|2113
6DZI|1|A|A|2114
6DZI|1|A|G|2115

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains