IL_6DZI_083

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_083 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.1374

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

6DZI|1|A|G|2157
6DZI|1|A|C|2158
*
6DZI|1|A|G|2188
6DZI|1|A|C|2189
6DZI|1|A|A|2190
6DZI|1|A|C|2191

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain j

CONSERVED PROTEIN DOMAIN