IL_6DZI_093

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_093 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5075

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6DZI|1|A|G|2347
6DZI|1|A|G|2348
6DZI|1|A|A|2349
6DZI|1|A|G|2350
6DZI|1|A|A|2351
*
6DZI|1|A|U|2383
6DZI|1|A|C|2384
6DZI|1|A|G|2385
6DZI|1|A|U|2386
6DZI|1|A|U|2387
6DZI|1|A|G|2388
6DZI|1|A|U|2389
6DZI|1|A|U|2390
6DZI|1|A|G|2391
6DZI|1|A|A|2392
6DZI|1|A|A|2393
6DZI|1|A|A|2394
6DZI|1|A|U|2395
6DZI|1|A|A|2396
6DZI|1|A|C|2397

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains