IL_6DZI_100

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_100 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.0903

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

6DZI|1|A|G|2678
6DZI|1|A|G|2679
*
6DZI|1|A|C|2720
6DZI|1|A|A|2721
6DZI|1|A|C|2722

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain 3

Uncharacterized protein

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L16