IL_6DZI_109

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

6DZI|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_109 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1851

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6DZI|1|A|U|2860
6DZI|1|A|U|2861
6DZI|1|A|G|2862
6DZI|1|A|A|2863
6DZI|1|A|G|2864
*
6DZI|1|A|C|2998
6DZI|1|A|A|2999
6DZI|1|A|A|3000
6DZI|1|A|G|3001
6DZI|1|A|A|3002
6DZI|1|A|C|3003
6DZI|1|A|C|3004
6DZI|1|A|A|3005
6DZI|1|A|G|3006

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13