IL_6DZI_112

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

6DZI|1|A|U|2913, 6DZI|1|A|A|2914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_112 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2281

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|U|2911
6DZI|1|A|A|2912
6DZI|1|A|U|2913
6DZI|1|A|A|2914
6DZI|1|A|C|2915
*
6DZI|1|A|G|2942
6DZI|1|A|A|2943
6DZI|1|A|U|2944
6DZI|1|A|A|2945
6DZI|1|A|G|2946

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19