IL_6DZI_114

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

6DZI|1|A|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_114 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1332

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DZI|1|A|G|2961
6DZI|1|A|A|2962
6DZI|1|A|U|2963
6DZI|1|A|A|2964
6DZI|1|A|A|2965
6DZI|1|A|C|2966
*
6DZI|1|A|G|2986
6DZI|1|A|G|2987
6DZI|1|A|A|2988
6DZI|1|A|A|2989
6DZI|1|A|A|2990
6DZI|1|A|C|2991

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36