IL_6DZI_118

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

6DZI|1|B|A|4

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_118 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2804

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6DZI|1|B|U|2
6DZI|1|B|U|3
6DZI|1|B|A|4
6DZI|1|B|C|5
*
6DZI|1|B|G|113
6DZI|1|B|A|114
6DZI|1|B|A|115

Current chains

Chain B

5S RNA (118-MER)

Nearby chains

Chain P

50S ribosomal protein L18