IL_6DZI_132

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

6DZI|1|h|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_132 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1942

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|h|G|144
6DZI|1|h|G|145
6DZI|1|h|A|146
6DZI|1|h|U|147
6DZI|1|h|A|148
6DZI|1|h|A|149
6DZI|1|h|G|150
*
6DZI|1|h|U|165
6DZI|1|h|C|166
6DZI|1|h|U|167
6DZI|1|h|A|168
6DZI|1|h|A|169
6DZI|1|h|U|170
6DZI|1|h|A|171
6DZI|1|h|C|172

Current chains

Chain h

16S rRNA

Nearby chains

Chain 7

30S ribosomal protein S20