IL_6DZI_134

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6DZI|1|h|U|244, 6DZI|1|h|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_134 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.2111

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6DZI|1|h|U|242
6DZI|1|h|A|243
6DZI|1|h|U|244
6DZI|1|h|C|245
6DZI|1|h|A|246
6DZI|1|h|G|247
*
6DZI|1|h|C|277
6DZI|1|h|G|278
6DZI|1|h|A|279
6DZI|1|h|C|280
6DZI|1|h|G|281
6DZI|1|h|A|282
6DZI|1|h|C|283
6DZI|1|h|G|284

Current chains

Chain h

16S rRNA

Nearby chains

Chain 5

30S ribosomal protein S17

Chain u

30S ribosomal protein S12