IL_6DZI_142
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- AGACG*CGGUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_142 not in the Motif Atlas
- Geometric match to IL_6CZR_130
- Geometric discrepancy: 0.2146
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DZI|1|h|A|446
6DZI|1|h|G|447
6DZI|1|h|A|448
6DZI|1|h|C|449
6DZI|1|h|G|450
*
6DZI|1|h|C|463
6DZI|1|h|G|464
6DZI|1|h|G|465
6DZI|1|h|U|466
6DZI|1|h|A|467
6DZI|1|h|U|468
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain l
- 30S ribosomal protein S4
- Chain z
- 30S ribosomal protein S16
Coloring options: