IL_6DZI_144

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_144 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.241

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6DZI|1|h|C|484
6DZI|1|h|G|485
6DZI|1|h|G|486
6DZI|1|h|C|487
6DZI|1|h|C|488
6DZI|1|h|A|489
6DZI|1|h|A|490
6DZI|1|h|C|491
*
6DZI|1|h|G|520
6DZI|1|h|G|521

Current chains

Chain h

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain u

30S ribosomal protein S12