#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-81-105-65-78-9
1 IL_7A0S_0347A0S0.18550SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWncSHcWW
2 IL_5J7L_2785J7L0.14140SSU/LSU pseudoknotDA LSU rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWcSHcWW
3 IL_4WF9_0374WF90.17200SSU/LSU pseudoknotX LSU rRNAU1048C1049C1050C1051A1052A1053A1054A1055*U1194A1195cWWncSHcWW
4 IL_9DFE_0369DFE0.000001A LSU rRNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW
5 IL_4V9F_0384V9F0.11810SSU/LSU pseudoknot0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
6 IL_8CRE_0528CRE0.15070SSU/LSU pseudoknot (H)1 LSU rRNAU1169G1170C1171C1172G1173G1174A1175A1176*U1321A1322cWWnchHcWW
7 IL_8P9A_2778P9A0.17070SSU/LSU pseudoknot (H)AR LSU rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWnchHcWW
8 IL_8CRE_4218CRE0.22230SSU/LSU pseudoknot (H)CM SSU rRNAA548G549G550G551C552A553A554G555*C585U586cWWncSHcWW
9 IL_8P9A_4028P9A0.22720SSU/LSU pseudoknot (H)sR SSU rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
10 IL_5J7L_0245J7L0.21700SSU/LSU pseudoknotAA SSU rRNAC504G505G506C507U508A509A510C511*G540G541cWWncSHntSWcWW
11 IL_4LFB_0204LFB0.23660SSU/LSU pseudoknotA SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWcSHcWW
12 IL_6CZR_1326CZR0.30450SSU/LSU pseudoknot1a SSU rRNAC488G489G490C491C492A493A494C495*G524G525ncSHcWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGCCGGAA*UA2
AGGGCAAG*CU2
CGGCCAAC*GG2
UCCCUAAA*UA1
UCCCAAAG*CA1
UCCCAAAA*UA1
CCCCCAAG*CG1
UCCCCAAG*CA1
CGGCUAAC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
CCCAAA*2
CCCCAA*2
GCCGGA*2
GGGCAA*2
GGCCAA*2
CCCUAA*1
GGCUAA*1

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SSU/LSU pseudoknot (7)
  • SSU/LSU pseudoknot (H) (4)
  • (1)
  • Basepair signature
    cWW-L-cWW-L-L-R-cSH
    Heat map statistics
    Min 0.07 | Avg 0.20 | Max 0.36
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