IL_6DZI_147

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_147 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.2082

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6DZI|1|h|C|574
6DZI|1|h|G|575
6DZI|1|h|C|576
*
6DZI|1|h|G|624
6DZI|1|h|G|625

Current chains

Chain h

16S rRNA

Nearby chains

Chain 5

30S ribosomal protein S17

Chain q

30S ribosomal protein S8