IL_6DZI_151

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_151 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3719

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6DZI|1|h|G|636
6DZI|1|h|U|637
6DZI|1|h|A|638
*
6DZI|1|h|U|727
6DZI|1|h|A|728
6DZI|1|h|A|729
6DZI|1|h|C|730

Current chains

Chain h

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S8

Chain x

30S ribosomal protein S15