IL_6DZI_157

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_157 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6DZI|1|h|G|869
6DZI|1|h|G|870
6DZI|1|h|A|871
6DZI|1|h|G|872
6DZI|1|h|U|873
6DZI|1|h|A|874
6DZI|1|h|C|875
6DZI|1|h|G|876
*
6DZI|1|h|U|887
6DZI|1|h|A|888
6DZI|1|h|A|889
6DZI|1|h|A|890
6DZI|1|h|A|891
6DZI|1|h|C|892

Current chains

Chain h

16S rRNA

Nearby chains

Chain j

CONSERVED PROTEIN DOMAIN

Chain u

30S ribosomal protein S12