IL_6DZI_173

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_173 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1732

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6DZI|1|h|C|1285
6DZI|1|h|G|1286
6DZI|1|h|G|1287
6DZI|1|h|A|1288
6DZI|1|h|U|1289
6DZI|1|h|C|1290
*
6DZI|1|h|G|1311
6DZI|1|h|U|1312
6DZI|1|h|G|1313
6DZI|1|h|A|1314
6DZI|1|h|A|1315
6DZI|1|h|G|1316

Current chains

Chain h

16S rRNA

Nearby chains

Chain v

30S ribosomal protein S13