IL_6DZI_175

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_175 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2227

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6DZI|1|h|G|1384
6DZI|1|h|C|1385
6DZI|1|h|C|1386
6DZI|1|h|C|1387
*
6DZI|1|h|G|1481
6DZI|1|h|U|1482
6DZI|1|h|A|1483
6DZI|1|h|A|1484
6DZI|1|h|C|1485

Current chains

Chain h

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Y

Ribosome hibernation promoting factor

Chain j

CONSERVED PROTEIN DOMAIN