IL_6DZI_181

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_181 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.241

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|h|C|1413
6DZI|1|h|C|1414
6DZI|1|h|G|1415
6DZI|1|h|A|1416
6DZI|1|h|A|1417
6DZI|1|h|G|1418
*
6DZI|1|h|C|1450
6DZI|1|h|G|1451
6DZI|1|h|A|1452
6DZI|1|h|A|1453
6DZI|1|h|G|1454

Current chains

Chain h

16S rRNA

Nearby chains

Chain 7

30S ribosomal protein S20

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Q

50S ribosomal protein L19