3D structure

PDB id
6DZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.46 Å

Loop

Sequence
GCUACU*AAAC
Length
10 nucleotides
Bulged bases
6DZI|1|A|U|981
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DZI_190 not in the Motif Atlas
Homologous match to IL_4WF9_033
Geometric discrepancy: 0.1542
The information below is about IL_4WF9_033
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_16301.1
Basepair signature
cWW-cWS-tWH-R-L-R-cWW
Number of instances in this motif group
9

Unit IDs

6DZI|1|A|G|979
6DZI|1|A|C|980
6DZI|1|A|U|981
6DZI|1|A|A|982
6DZI|1|A|C|983
6DZI|1|A|U|984
*
6DZI|1|A|A|1024
6DZI|1|A|A|1025
6DZI|1|A|A|1026
6DZI|1|A|C|1027

Current chains

Chain A
23 S rRNA (3119-MER)

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain N
50S ribosomal protein L16

Coloring options:


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