IL_6DZI_197

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

6DZI|1|A|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_197 not in the Motif Atlas

Homologous match to IL_9DFE_056

Geometric discrepancy: 0.217

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DZI|1|A|G|1658
6DZI|1|A|U|1659
6DZI|1|A|A|1660
6DZI|1|A|G|1661
*
6DZI|1|A|U|1771
6DZI|1|A|G|1772
6DZI|1|A|A|1773
6DZI|1|A|U|1774
6DZI|1|A|C|1775

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains