IL_6DZI_216

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

6DZI|1|h|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_216 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.3347

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|h|G|409
6DZI|1|h|G|410
6DZI|1|h|A|411
6DZI|1|h|U|412
6DZI|1|h|G|413
6DZI|1|h|A|414
6DZI|1|h|C|415
6DZI|1|h|G|416
*
6DZI|1|h|U|427
6DZI|1|h|G|428
6DZI|1|h|U|429
6DZI|1|h|A|430
6DZI|1|h|A|431
6DZI|1|h|A|432
6DZI|1|h|C|433

Current chains

Chain h

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S4