IL_6DZI_219

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UACAAAG*UUUCAAAG

Length

15 nucleotides

Bulged bases

6DZI|1|h|U|1266, 6DZI|1|h|U|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_219 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.5488

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6DZI|1|h|U|1228
6DZI|1|h|A|1229
6DZI|1|h|C|1230
6DZI|1|h|A|1231
6DZI|1|h|A|1232
6DZI|1|h|A|1233
6DZI|1|h|G|1234
*
6DZI|1|h|U|1265
6DZI|1|h|U|1266
6DZI|1|h|U|1267
6DZI|1|h|C|1268
6DZI|1|h|A|1269
6DZI|1|h|A|1270
6DZI|1|h|A|1271
6DZI|1|h|G|1272

Current chains

Chain h

16S rRNA

Nearby chains

Chain 4

30S ribosomal protein S9

Chain p

30S ribosomal protein S7

Chain s

30S ribosomal protein S10